SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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A struct that contains the actual alignment result data. More...
#include <seqan3/alignment/pairwise/alignment_result.hpp>
Public Attributes | |
alignment_t | alignment {} |
The alignment, i.e. the actual base pair matching. | |
begin_positions_t | begin_positions {} |
The begin positions of the alignment. | |
end_positions_t | end_positions {} |
The end positions of the alignment. | |
score_t | score {} |
The alignment score. | |
score_debug_matrix_t | score_debug_matrix {} |
The score matrix. Only accessible with seqan3::align_cfg::detail::debug. | |
sequence1_id_t | sequence1_id {} |
The alignment identifier for the first sequence. | |
sequence2_id_t | sequence2_id {} |
The alignment identifier for the second sequence. | |
trace_debug_matrix_t | trace_debug_matrix {} |
The trace matrix. Only accessible with seqan3::align_cfg::detail::debug. | |
A struct that contains the actual alignment result data.
sequence1_id_t | The type of the alignment identifier for the first sequence. |
sequence2_id_t | The type of the alignment identifier for the second sequence. |
score_t | The type of the resulting score. |
end_positions_t | The type of the end positions, can be omitted. |
begin_positions_t | The type of the begin positions, can be omitted. |
alignment_t | The type of the alignment, can be omitted. |
score_debug_matrix_t | The type of the score matrix. Only present if seqan3::align_cfg::detail::debug is enabled. |
trace_debug_matrix_t | The type of the trace matrix. Only present if seqan3::align_cfg::detail::debug is enabled. |