59 constexpr aa27() noexcept = default;
60 constexpr
aa27(
aa27 const &) noexcept = default;
62 constexpr
aa27 & operator=(
aa27 const &) noexcept = default;
63 constexpr
aa27 & operator=(
aa27 &&) noexcept = default;
64 ~
aa27() noexcept = default;
72 'J',
'K',
'L',
'M',
'N',
'O',
'P',
'Q',
'R',
73 'S',
'T',
'U',
'V',
'W',
'X',
'Y',
'Z',
'*'};
125inline namespace literals
142constexpr aa27 operator""_aa27(
char const c)
noexcept
163 for (
size_t i = 0; i < n; ++i)
164 r[i].assign_char(s[i]);
Provides seqan3::aminoacid_alphabet.
Provides seqan3::aminoacid_base.
The twenty-seven letter amino acid alphabet.
Definition aa27.hpp:43
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition aa27.hpp:82
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition aa27.hpp:76
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition aa27.hpp:71
friend base_t
Befriend seqan3::nucleotide_base.
Definition aa27.hpp:49
constexpr aa27() noexcept=default
Defaulted.
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition aa27.hpp:91
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition alphabet_base.hpp:258
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition aminoacid_base.hpp:29
alphabet_base< aa27, size, char > base_t
Type of the base class.
Definition aminoacid_base.hpp:32
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80